PSSR2 Documentation#
PSSR2 (Point-Scanning Super-Resolution 2) is a user-friendly PyTorch-based workflow for super-resolution tasks using microscopy images. This is the official reimplementation and extention of the methods described in the original paper: Deep learning-based point-scanning super-resolution imaging. PSSR2 contains various improvements from its predecessor, which are elaborated in our preprint: PSSR2: a user-friendly Python package for democratizing deep learning-based point-scanning super-resolution microscopy.
The functionality of PSSR2 is accessible in three ways:
Directly through the Python package
Through the integrated Command Line Interface
Through the integrated Napari plugin
If you have never used PSSR2 before, Getting Started outlines installation and basic usage. Full reference and explanations of all PSSR2 tools is available in API Reference.
This package is under continuous development. All code can be found at https://github.com/ucsdmanorlab/PSSR2. If you experience any bugs, unexpected behaviors, or have any suggestions, make sure to open a ticket.
Sample data and pretrained models can currently be found here.
User Guide#
The User Guide covers the installation, usage, and principles of PSSR2.
API Reference#
The API Reference covers full documentation of all PSSR2 modules.